The really big difference is that what you make with a molecular machine can be completely precise, down to the tiniest degree of detail that can exist in the world.
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The other advantage is that in conventional manufacturing processes, it takes a long time for a factory to produce an amount of product equal to its own weight. With molecular machines, the time required would be something more like a minute.
On the molecular scale, you find it's reasonable to have a machine that does a million steps per second, a mechanical system that works at computer speeds.
One of the concepts essential to molecular manufacturing is that of a self-replicating manufacturing system. That concept has lagged behind in its acceptance.
I had been impressed by the fact that biological systems were based on molecular machines and that we were learning to design and build these sorts of things.
Manufacturing takes place in very large facilities. If you want to build a computer chip, you need a giant semiconductor fabrication facility. But nature can grow complex molecular machines using nothing more than a plant.
In many biological structures proteins are simply components of larger molecular machines.
Protein engineering is a technology of molecular machines - of molecular machines that are part of replicators - and so it comes from an area that already raises some of the issues that nanotechnology will raise.
The difference between a tool and a machine is not capable of very precise distinction; nor is it necessary, in a popular explanation of those terms, to limit very strictly their acceptation.
Nanotechnology is the idea that we can create devices and machines all the way down to the nanometer scale, which is a billionth of a meter, about half the width of a human DNA molecule.
The problem is how do molecules react. Because if you want to transform a molecule into something useful or something you're interested in, it helps a lot to understand the structure. That means you can explore much more complicated systems, much more complicated reactions.
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